Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_11674 | Not Available | + | 5216298 - 5216669 | 14224.1 |
| hypothetical protein | SAMN04488101_11675 | Not Available | + | 5216687 - 5217424 | 27756.2 |
| hpp family protein | SAMN04488101_11676 | Not Available | - | 5217462 - 5218052 | 21502.0 |
| hypothetical protein | SAMN04488101_11677 | Not Available | - | 5218120 - 5218770 | 23094.3 |
| transcriptional regulator, badm/rrf2 family | SAMN04488101_11678 | Not Available | - | 5218831 - 5219280 | 16453.7 |
| hypothetical protein | SAMN04488101_11679 | Not Available | + | 5219512 - 5220459 | 36117.4 |
| hypothetical protein | SAMN04488101_11680 | Not Available | + | 5220647 - 5222698 | 79674.8 |
| thiol-disulfide isomerase or thioredoxin | SAMN04488101_11681 | Not Available | + | 5222887 - 5223735 | 32231.8 |
| imidazolonepropionase | SAMN04488101_11682 | Not Available | - | 5223730 - 5224983 | 44997.0 |
| peroxiredoxin | SAMN04488101_11683 | Not Available | - | 5225012 - 5226151 | 42234.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.