Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_11634 | Not Available | - | 5164485 - 5167919 | 127103.0 |
| fecr family protein | SAMN04488101_11635 | Not Available | - | 5168081 - 5169241 | 43273.8 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_11636 | Not Available | - | 5169336 - 5169941 | 23812.8 |
| hypothetical protein | SAMN04488101_11637 | Not Available | + | 5170007 - 5170135 | 5027.32 |
| hypothetical protein | SAMN04488101_11638 | Not Available | - | 5170356 - 5171489 | 42495.5 |
| starch-binding associating with outer membrane | SAMN04488101_11639 | Not Available | - | 5171477 - 5173192 | 65490.6 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_11640 | Not Available | - | 5173204 - 5176734 | 131190.0 |
| fecr family protein | SAMN04488101_11641 | Not Available | - | 5176943 - 5178094 | 42743.2 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_11642 | Not Available | - | 5178171 - 5178755 | 22928.0 |
| predicted dehydrogenase | SAMN04488101_11643 | Not Available | - | 5178822 - 5179799 | 34887.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.