Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| rod shape-determining protein mrec | SAMN04488101_1164 | Not Available | + | 5123581 - 5124417 | 30711.1 |
| rod shape-determining protein mred | SAMN04488101_1165 | Not Available | + | 5124410 - 5124925 | 19916.2 |
| penicillin-binding protein 2 | SAMN04488101_1166 | Not Available | + | 5124925 - 5126865 | 72530.6 |
| rod shape determining protein roda | SAMN04488101_1167 | Not Available | + | 5126862 - 5128130 | 47321.8 |
| hypothetical protein | SAMN04488101_1168 | Not Available | - | 5128158 - 5129213 | 40507.4 |
| thymidine kinase | SAMN04488101_1169 | Not Available | + | 5129315 - 5129896 | 21602.0 |
| hypothetical protein | SAMN04488101_11610 | Not Available | - | 5129904 - 5130029 | 4715.95 |
| ferritin | SAMN04488101_11611 | Not Available | - | 5130123 - 5130653 | 20639.1 |
| hypothetical protein | SAMN04488101_11612 | Not Available | - | 5130757 - 5131122 | 14042.2 |
| methyltransferase domain-containing protein | SAMN04488101_11613 | Not Available | - | 5131222 - 5131893 | 24801.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.