Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-n-acetylglucosamine synthase | SAMN04488101_115127 | Not Available | + | 5109312 - 5110484 | 44940.7 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488101_115128 | Not Available | + | 5110510 - 5111646 | 43609.2 |
| glycosyl transferase family 2 | SAMN04488101_115129 | Not Available | + | 5111777 - 5112583 | 30162.2 |
| membrane protein involved in the export of o-antigen and teichoic acid | SAMN04488101_115130 | Not Available | + | 5112600 - 5113955 | 50906.6 |
| beta-galactosidase | SAMN04488101_115131 | Not Available | - | 5113973 - 5115529 | 58685.0 |
| hypothetical protein | SAMN04488101_115132 | Not Available | - | 5115534 - 5116955 | 52002.5 |
| hypothetical protein | SAMN04488101_115133 | Not Available | + | 5117375 - 5118946 | 59765.3 |
| transposase | SAMN04488101_1161 | Not Available | - | 5120164 - 5120435 | 10574.0 |
| phosphoribosylaminoimidazolecarboxamide formyltransferase / imp cyclohydrolase | SAMN04488101_1162 | Not Available | + | 5120872 - 5122398 | 55741.6 |
| rod shape-determining protein mreb | SAMN04488101_1163 | Not Available | + | 5122486 - 5123508 | 36830.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.