Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_115117 | Not Available | + | 5100644 - 5100835 | 7236.18 |
| hypothetical protein | SAMN04488101_115118 | Not Available | + | 5100943 - 5101311 | 13534.4 |
| response regulator receiver domain-containing protein | SAMN04488101_115119 | Not Available | + | 5101530 - 5101913 | 14341.4 |
| sugar transferase involved in lps biosynthesis (colanic, teichoic acid) | SAMN04488101_115120 | Not Available | + | 5101913 - 5102995 | 41725.9 |
| outer membrane efflux protein | SAMN04488101_115121 | Not Available | + | 5103041 - 5103721 | 25961.1 |
| uncharacterized protein involved in exopolysaccharide biosynthesis | SAMN04488101_115122 | Not Available | + | 5103739 - 5105892 | 80853.1 |
| hypothetical protein | SAMN04488101_115123 | Not Available | - | 5105845 - 5106207 | 13553.0 |
| o-antigen ligase like membrane protein | SAMN04488101_115124 | Not Available | + | 5106212 - 5107360 | 42781.5 |
| transferase hexapeptide (six repeat-containing protein) | SAMN04488101_115125 | Not Available | + | 5107489 - 5108103 | 22556.5 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488101_115126 | Not Available | + | 5108116 - 5109315 | 45948.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.