Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| exonuclease iii | SAMN04488101_101401 | Not Available | + | 473039 - 474637 | 60562.2 |
| calcineurin-like phosphoesterase superfamily domain-containing protein | SAMN04488101_101402 | Not Available | + | 474640 - 475608 | 36859.9 |
| 3',5'-cyclic amp phosphodiesterase cpda | SAMN04488101_101403 | Not Available | + | 475632 - 476567 | 35528.4 |
| ompa family protein | SAMN04488101_101404 | Not Available | - | 476641 - 478575 | 70272.6 |
| listeria/bacterioides repeat-containing protein | SAMN04488101_101405 | Not Available | - | 478603 - 480576 | 67105.4 |
| putative mrna 3-end processing factor | SAMN04488101_101406 | Not Available | + | 481087 - 482097 | 37429.7 |
| dna ligase-1 | SAMN04488101_101407 | Not Available | + | 482098 - 483702 | 61424.7 |
| atp-dependent helicase lhr and lhr-like helicase | SAMN04488101_101408 | Not Available | + | 483738 - 486299 | 97141.1 |
| putative phosphoesterase | SAMN04488101_101409 | Not Available | + | 486289 - 486936 | 24903.4 |
| membrane protein | SAMN04488101_101410 | Not Available | + | 487009 - 487950 | 34016.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.