Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ahpc/tsa family protein | SAMN04488101_11587 | Not Available | - | 5071309 - 5071797 | 18560.4 |
| signal transduction histidine kinase | SAMN04488101_11588 | Not Available | - | 5071944 - 5073275 | 50744.4 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN04488101_11589 | Not Available | - | 5073277 - 5073951 | 25933.4 |
| hypothetical protein | SAMN04488101_11590 | Not Available | - | 5073961 - 5074254 | 11538.8 |
| hypothetical protein | SAMN04488101_11591 | Not Available | + | 5074426 - 5075043 | 24194.8 |
| protein of unknown function | SAMN04488101_11592 | Not Available | - | 5075132 - 5075824 | 24677.6 |
| ribose 5-phosphate isomerase b | SAMN04488101_11593 | Not Available | + | 5075967 - 5076416 | 16102.3 |
| cytochrome c, mono-and diheme variants | SAMN04488101_11594 | Not Available | + | 5076423 - 5078708 | 84788.1 |
| phoh-like atpase | SAMN04488101_11595 | Not Available | + | 5079258 - 5080607 | 50613.0 |
| hypothetical protein | SAMN04488101_11596 | Not Available | + | 5080638 - 5080943 | 10659.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.