Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| thiamine-phosphate diphosphorylase | SAMN04488101_11576 | Not Available | - | 5060876 - 5061490 | 21701.5 |
| hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | SAMN04488101_11577 | Not Available | - | 5061487 - 5062251 | 27980.0 |
| thiamine-phosphate pyrophosphorylase | SAMN04488101_11578 | Not Available | - | 5062270 - 5062875 | 22852.8 |
| hydroxymethylpyrimidine synthase | SAMN04488101_11579 | Not Available | - | 5062901 - 5064784 | 70226.6 |
| sulfur carrier protein this | SAMN04488101_11580 | Not Available | - | 5064822 - 5065025 | 7236.82 |
| sugar phosphate permease | SAMN04488101_11582 | Not Available | + | 5065225 - 5066454 | 45074.5 |
| gas vesicle protein | SAMN04488101_11583 | Not Available | - | 5066509 - 5066913 | 14448.2 |
| mfs transporter, dha1 family, arabinose polymer transporter | SAMN04488101_11584 | Not Available | + | 5067320 - 5068477 | 40395.0 |
| protein of unknown function | SAMN04488101_11585 | Not Available | + | 5068529 - 5069098 | 22020.1 |
| prolyl oligopeptidase serine peptidase. merops family s09a | SAMN04488101_11586 | Not Available | + | 5069157 - 5071301 | 79461.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.