Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| signal transduction histidine kinase | SAMN04488101_11525 | Not Available | + | 4996940 - 4998694 | 65863.4 |
| methionine synthase (b12-independent) | SAMN04488101_11527 | Not Available | + | 4999358 - 5001676 | 88454.9 |
| 3-oxoacyl-[acyl-carrier-protein] synthase-3 | SAMN04488101_11528 | Not Available | + | 5001732 - 5002745 | 36837.9 |
| acyl-coa hydrolase | SAMN04488101_11529 | Not Available | + | 5002746 - 5003132 | 14422.4 |
| hypothetical protein | SAMN04488101_11530 | Not Available | + | 5003249 - 5003632 | 14385.7 |
| iron complex outermembrane recepter protein | SAMN04488101_11531 | Not Available | + | 5003803 - 5006109 | 85275.1 |
| hypothetical protein | SAMN04488101_11532 | Not Available | + | 5006115 - 5007389 | 46093.4 |
| hypothetical protein | SAMN04488101_11533 | Not Available | + | 5007462 - 5007899 | 16461.2 |
| protein sco1/2 | SAMN04488101_11534 | Not Available | + | 5007915 - 5008538 | 23863.7 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_11535 | Not Available | + | 5008709 - 5009281 | 22662.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.