Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| two-component system, ompr family, alkaline phosphatase synthesis response regulator phop | SAMN04488101_1154 | Not Available | + | 4972715 - 4973404 | 26059.9 |
| 23s rrna pseudouridine955/2504/2580 synthase | SAMN04488101_1155 | Not Available | + | 4973435 - 4974157 | 27487.3 |
| chloride channel protein, cic family | SAMN04488101_1156 | Not Available | + | 4974171 - 4975955 | 65342.0 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_1157 | Not Available | + | 4976106 - 4976723 | 24250.5 |
| fecr family protein | SAMN04488101_1158 | Not Available | + | 4976753 - 4977913 | 43881.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_1159 | Not Available | + | 4978102 - 4981488 | 124788.0 |
| starch-binding associating with outer membrane | SAMN04488101_11510 | Not Available | + | 4981495 - 4983387 | 70750.9 |
| protein of unknown function | SAMN04488101_11511 | Not Available | + | 4983424 - 4984389 | 35756.8 |
| dna-binding transcriptional response regulator, ntrc family, contains rec, aaa-type atpase, and a fis-type dna-binding domains | SAMN04488101_11512 | Not Available | - | 4984473 - 4985879 | 52400.8 |
| hypothetical protein | SAMN04488101_11514 | Not Available | + | 4986444 - 4986752 | 11079.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.