Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| lysophospholipase l1 | SAMN04488101_11461 | Not Available | - | 4921328 - 4923013 | 63327.8 |
| rhamnogalacturonyl hydrolase yesr | SAMN04488101_11462 | Not Available | - | 4923078 - 4924190 | 42457.2 |
| bnr repeat-containing family member | SAMN04488101_11463 | Not Available | - | 4924215 - 4925588 | 51910.5 |
| starch-binding associating with outer membrane | SAMN04488101_11464 | Not Available | - | 4925628 - 4927064 | 52801.1 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_11465 | Not Available | - | 4927082 - 4930582 | 126470.0 |
| fecr family protein | SAMN04488101_11466 | Not Available | - | 4930800 - 4932014 | 45255.0 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_11467 | Not Available | - | 4932092 - 4932700 | 23932.6 |
| outer membrane receptor proteins, mostly fe transport | SAMN04488101_11468 | Not Available | + | 4932993 - 4935380 | 88972.4 |
| protein of unknown function | SAMN04488101_11469 | Not Available | + | 4935399 - 4936658 | 45102.2 |
| uncharacterized iron-regulated membrane protein | SAMN04488101_11470 | Not Available | + | 4936710 - 4938032 | 50137.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.