Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| starch-binding associating with outer membrane | SAMN04488101_11411 | Not Available | - | 4825156 - 4827033 | 70716.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_11412 | Not Available | - | 4827047 - 4830469 | 125437.0 |
| fecr family protein | SAMN04488101_11413 | Not Available | - | 4830642 - 4831769 | 41064.4 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_11414 | Not Available | - | 4831918 - 4832505 | 22397.2 |
| hypothetical protein | SAMN04488101_11415 | Not Available | - | 4832524 - 4832652 | 4868.18 |
| rna polymerase sigma-70 factor, bacteroides expansion family 1 | SAMN04488101_11416 | Not Available | + | 4832728 - 4833306 | 22869.7 |
| fecr family protein | SAMN04488101_11417 | Not Available | + | 4833383 - 4834555 | 43364.9 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_11418 | Not Available | + | 4834694 - 4838197 | 129368.0 |
| susd and ragb outer membrane lipoprotein | SAMN04488101_11419 | Not Available | + | 4838215 - 4839762 | 57399.8 |
| peroxiredoxin | SAMN04488101_11420 | Not Available | + | 4839771 - 4840295 | 19728.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.