Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| asma family protein | SAMN04488101_113143 | Not Available | - | 4800274 - 4802706 | 89532.3 |
| malate dehydrogenase (quinone) | SAMN04488101_113144 | Not Available | - | 4802815 - 4804341 | 56254.9 |
| ribosomal protein s18 acetylase rimi | SAMN04488101_113145 | Not Available | + | 4804534 - 4805025 | 18241.1 |
| dna-binding transcriptional regulator, marr family | SAMN04488101_113146 | Not Available | + | 4805022 - 4805486 | 17890.9 |
| outer membrane protein beta-barrel family protein | SAMN04488101_113147 | Not Available | + | 4805548 - 4806279 | 27872.6 |
| dienelactone hydrolase | SAMN04488101_113148 | Not Available | - | 4806276 - 4807046 | 28043.7 |
| Trna-thr | Not Available | Not Available | + | 4807250 - 4807322 | Not Available |
| urea transporter | SAMN04488101_113150 | Not Available | + | 4807403 - 4808275 | 31243.2 |
| hypothetical protein | SAMN04488101_113151 | Not Available | + | 4808679 - 4809551 | 31466.5 |
| atpase components of abc transporters with duplicated atpase domains | SAMN04488101_113152 | Not Available | - | 4809843 - 4811429 | 59285.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.