Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_113103 | Not Available | - | 4756364 - 4756486 | 4734.98 |
| acyl-coa hydrolase | SAMN04488101_113104 | Not Available | - | 4756996 - 4758270 | 46523.9 |
| cu-processing system permease protein | SAMN04488101_113105 | Not Available | - | 4758296 - 4759063 | 28469.2 |
| cu-processing system atp-binding protein | SAMN04488101_113106 | Not Available | - | 4759067 - 4759771 | 26139.3 |
| nitrous oxidase accessory protein | SAMN04488101_113107 | Not Available | - | 4759768 - 4761006 | 46623.9 |
| copper chaperone nosl | SAMN04488101_113108 | Not Available | - | 4761003 - 4762037 | 38664.2 |
| nitrous oxide reductase apoprotein | SAMN04488101_113109 | Not Available | - | 4762101 - 4764095 | 73512.6 |
| cytochrome c | SAMN04488101_113110 | Not Available | - | 4764108 - 4764587 | 17535.0 |
| hypothetical protein | SAMN04488101_113111 | Not Available | + | 4764750 - 4765982 | 46708.0 |
| regulator of cell morphogenesis and no signaling | SAMN04488101_113112 | Not Available | - | 4766040 - 4767002 | 36404.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.