Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| trna(ile)-lysidine synthase | SAMN04488101_102172 | Not Available | - | 1200876 - 1202237 | 51726.0 |
| osta-like protein | SAMN04488101_102173 | Not Available | + | 1202317 - 1204620 | 85511.7 |
| xtp/ditp diphosphohydrolase | SAMN04488101_102174 | Not Available | - | 1204595 - 1205170 | 21621.6 |
| hypothetical protein | SAMN04488101_102175 | Not Available | - | 1205172 - 1205708 | 19521.2 |
| peptidyl-prolyl cis-trans isomerase sura | SAMN04488101_102176 | Not Available | + | 1205925 - 1206317 | 15271.4 |
| periplasmic chaperone for outer membrane proteins sura | SAMN04488101_102177 | Not Available | + | 1206384 - 1207745 | 52090.4 |
| moxr-like atpase | SAMN04488101_102178 | Not Available | + | 1207752 - 1208714 | 35552.9 |
| glycerophosphoryl diester phosphodiesterase | SAMN04488101_102179 | Not Available | - | 1208730 - 1209608 | 33272.8 |
| hypothetical protein | SAMN04488101_102180 | Not Available | - | 1209736 - 1210593 | 31520.2 |
| cysteinyl-trna synthetase | SAMN04488101_102181 | Not Available | - | 1210640 - 1212100 | 55084.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.