Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| lsu ribosomal protein l4p | SAMN04488101_10292 | Not Available | - | 1105890 - 1106519 | 23138.9 |
| large subunit ribosomal protein l3 | SAMN04488101_10293 | Not Available | - | 1106524 - 1107141 | 21851.4 |
| uncharacterized membrane protein | SAMN04488101_10294 | Not Available | - | 1107324 - 1107719 | 14317.9 |
| hypothetical protein | SAMN04488101_10295 | Not Available | - | 1107716 - 1108621 | 31456.7 |
| hypothetical protein | SAMN04488101_10296 | Not Available | + | 1108636 - 1109244 | 22866.7 |
| ssu ribosomal protein s10p | SAMN04488101_10297 | Not Available | - | 1109311 - 1109616 | 11418.2 |
| translation elongation factor 2 (ef-2/ef-g) | SAMN04488101_10298 | Not Available | - | 1109673 - 1111787 | 77825.1 |
| ssu ribosomal protein s7p | SAMN04488101_10299 | Not Available | - | 1111806 - 1112273 | 17577.5 |
| ssu ribosomal protein s12p | SAMN04488101_102100 | Not Available | - | 1112290 - 1112703 | 15095.5 |
| uncharacterized conserved protein | SAMN04488101_102101 | Not Available | - | 1112858 - 1113079 | 8662.52 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.