Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| methionyl aminopeptidase | SAMN04488101_10272 | Not Available | - | 1095836 - 1096621 | 28403.0 |
| protein translocase subunit secy/sec61 alpha | SAMN04488101_10273 | Not Available | - | 1096630 - 1097967 | 48218.4 |
| lsu ribosomal protein l15p | SAMN04488101_10274 | Not Available | - | 1097971 - 1098417 | 15609.9 |
| lsu ribosomal protein l30p | SAMN04488101_10275 | Not Available | - | 1098529 - 1098708 | 6662.45 |
| ssu ribosomal protein s5p | SAMN04488101_10276 | Not Available | - | 1098713 - 1099231 | 18010.0 |
| large subunit ribosomal protein l18 | SAMN04488101_10277 | Not Available | - | 1099250 - 1099603 | 12616.2 |
| lsu ribosomal protein l6p | SAMN04488101_10278 | Not Available | - | 1099609 - 1100166 | 20074.4 |
| small subunit ribosomal protein s8 | SAMN04488101_10279 | Not Available | - | 1100185 - 1100583 | 14589.0 |
| small subunit ribosomal protein s14 | SAMN04488101_10280 | Not Available | - | 1100698 - 1100967 | 10046.5 |
| lsu ribosomal protein l5p | SAMN04488101_10281 | Not Available | - | 1100967 - 1101533 | 21206.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.