Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| nucleotidyl transferase | SAMN04488101_10262 | Not Available | + | 1087256 - 1088155 | 33933.3 |
| molecular chaperone dnak | SAMN04488101_10263 | Not Available | - | 1088230 - 1090146 | 68681.2 |
| methyltransferase domain-containing protein | SAMN04488101_10264 | Not Available | - | 1090316 - 1091527 | 45990.9 |
| 2'-5' rna ligase | SAMN04488101_10265 | Not Available | + | 1091583 - 1092137 | 21665.1 |
| large subunit ribosomal protein l17 | SAMN04488101_10266 | Not Available | - | 1092197 - 1092718 | 19312.1 |
| dna-directed rna polymerase subunit alpha | SAMN04488101_10267 | Not Available | - | 1092811 - 1093803 | 37228.9 |
| small subunit ribosomal protein s4 | SAMN04488101_10268 | Not Available | - | 1093881 - 1094489 | 22943.6 |
| ssu ribosomal protein s11p | SAMN04488101_10269 | Not Available | - | 1094555 - 1094944 | 13788.8 |
| ssu ribosomal protein s13p | SAMN04488101_10270 | Not Available | - | 1094966 - 1095343 | 14072.2 |
| translation initiation factor if-1 | SAMN04488101_10271 | Not Available | - | 1095546 - 1095764 | 8308.24 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.