Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| peptidyl-prolyl cis-trans isomerase b (cyclophilin b) | SAMN04488101_10242 | Not Available | - | 1061314 - 1061775 | 16688.6 |
| starch-binding associating with outer membrane | SAMN04488101_10243 | Not Available | - | 1061853 - 1063445 | 59658.8 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_10244 | Not Available | - | 1063453 - 1066839 | 126053.0 |
| fecr family protein | SAMN04488101_10245 | Not Available | - | 1067057 - 1068199 | 42327.6 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_10246 | Not Available | - | 1068270 - 1068872 | 23552.8 |
| hypothetical protein | SAMN04488101_10247 | Not Available | + | 1069042 - 1070316 | 47890.0 |
| putative porin | SAMN04488101_10248 | Not Available | - | 1070313 - 1072325 | 77582.4 |
| purine-nucleoside phosphorylase | SAMN04488101_10249 | Not Available | - | 1072325 - 1073140 | 29860.7 |
| lipid-a-disaccharide kinase | SAMN04488101_10250 | Not Available | - | 1073112 - 1074173 | 40111.7 |
| delta-1-pyrroline-5-carboxylate dehydrogenase | SAMN04488101_10251 | Not Available | + | 1074289 - 1075926 | 59983.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.