Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN04488101_10222 | Not Available | + | 1035255 - 1037885 | 99031.6 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_10223 | Not Available | + | 1037907 - 1041257 | 123853.0 |
| susd family protein | SAMN04488101_10224 | Not Available | + | 1041269 - 1042591 | 49446.9 |
| two component transcriptional regulator, lyttr family | SAMN04488101_10225 | Not Available | + | 1042680 - 1043435 | 28906.2 |
| atp-binding cassette, subfamily b | SAMN04488101_10226 | Not Available | - | 1043764 - 1045533 | 66604.0 |
| trna pseudouridine38-40 synthase | SAMN04488101_10227 | Not Available | - | 1045536 - 1046276 | 28113.6 |
| protein of unknown function | SAMN04488101_10228 | Not Available | + | 1046366 - 1046830 | 16968.6 |
| atp-dependent rna helicase dead | SAMN04488101_10229 | Not Available | + | 1046891 - 1048804 | 70252.3 |
| hypothetical protein | SAMN04488101_10230 | Not Available | - | 1048896 - 1049246 | 12495.5 |
| glycerol-3-phosphate dehydrogenase (nad(p)+) | SAMN04488101_10231 | Not Available | - | 1049302 - 1050282 | 36338.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.