Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| prolyl oligopeptidase family protein | SAMN04488101_10175 | Not Available | - | 94873 - 97281 | 89133.5 |
| phage integrase sam-like domain-containing protein | SAMN04488101_10176 | Not Available | + | 97660 - 98931 | 48510.5 |
| helix-turn-helix domain-containing protein | SAMN04488101_10177 | Not Available | - | 98917 - 99351 | 16323.9 |
| hypothetical protein | SAMN04488101_10178 | Not Available | - | 99431 - 99817 | 14675.9 |
| protein of unknown function | SAMN04488101_10179 | Not Available | - | 99817 - 100386 | 21834.4 |
| phage repressor protein c, contains cro/c1-type hth and peptisase s24 domains | SAMN04488101_10180 | Not Available | - | 100389 - 101201 | 30993.6 |
| dna-binding transcriptional regulator, csgd family | SAMN04488101_10181 | Not Available | + | 101332 - 101883 | 20176.1 |
| hypothetical protein | SAMN04488101_10182 | Not Available | + | 101890 - 102096 | 7913.87 |
| hypothetical protein | SAMN04488101_10183 | Not Available | + | 102174 - 102572 | 15549.5 |
| hypothetical protein | SAMN04488101_10184 | Not Available | + | 102572 - 102877 | 11071.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.