Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| thif family protein | SAMN04488101_101861 | Not Available | - | 994866 - 997193 | 87762.7 |
| response regulator receiver domain-containing protein | SAMN04488101_101862 | Not Available | + | 997311 - 997766 | 17659.4 |
| gliding motility-associated c-terminal domain-containing protein | SAMN04488101_101863 | Not Available | + | 997794 - 1001381 | 130219.0 |
| type ix secretion system membrane protein, porp/sprf family | SAMN04488101_101864 | Not Available | + | 1001383 - 1002402 | 37838.0 |
| rna polymerase, sigma 54 subunit, rpon/sigl | SAMN04488101_101865 | Not Available | - | 1002413 - 1003885 | 56678.4 |
| hypothetical protein | SAMN04488101_101866 | Not Available | - | 1004008 - 1004646 | 24053.8 |
| hypothetical protein | SAMN04488101_101867 | Not Available | - | 1004666 - 1005310 | 23857.8 |
| transposase and inactivated derivatives | SAMN04488101_101868 | Not Available | + | 1005459 - 1005824 | 13616.4 |
| hypothetical protein | SAMN04488101_101869 | Not Available | + | 1005821 - 1005999 | 7248.83 |
| hypothetical protein | SAMN04488101_1021 | Not Available | + | 1006222 - 1006653 | 16465.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.