Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_101831 | Not Available | + | 964738 - 965304 | 22549.2 |
| hypothetical protein | SAMN04488101_101832 | Not Available | + | 965292 - 965705 | 15528.2 |
| amidohydrolase | SAMN04488101_101833 | Not Available | - | 965836 - 966741 | 34634.0 |
| hypothetical protein | SAMN04488101_101834 | Not Available | + | 967341 - 967934 | 20264.3 |
| hypothetical protein | SAMN04488101_101835 | Not Available | + | 967988 - 968314 | 12111.2 |
| hypothetical protein | SAMN04488101_101836 | Not Available | + | 968319 - 969170 | 31819.7 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN04488101_101837 | Not Available | + | 969193 - 969873 | 25616.0 |
| signal transduction histidine kinase | SAMN04488101_101838 | Not Available | + | 969870 - 971183 | 50616.5 |
| thiosulfate/3-mercaptopyruvate sulfurtransferase | SAMN04488101_101839 | Not Available | + | 971492 - 972322 | 30422.1 |
| threonine/homoserine efflux transporter rhta | SAMN04488101_101840 | Not Available | - | 972649 - 973530 | 32205.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.