Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_101821 | Not Available | + | 953501 - 954034 | 20089.0 |
| acyl dehydratase | SAMN04488101_101822 | Not Available | + | 954182 - 954640 | 17373.9 |
| heparin/heparan-sulfate lyase | SAMN04488101_101823 | Not Available | + | 954900 - 957218 | 87922.2 |
| acetyltransferase (gnat) family protein | SAMN04488101_101824 | Not Available | - | 957280 - 958080 | 30333.5 |
| protein of unknown function | SAMN04488101_101825 | Not Available | - | 958134 - 958622 | 18540.5 |
| drug resistance transporter, emrb/qaca subfamily | SAMN04488101_101826 | Not Available | - | 958619 - 960124 | 53909.8 |
| transcriptional regulator, arac family | SAMN04488101_101827 | Not Available | + | 960218 - 961048 | 32126.2 |
| uncharacterized membrane protein yccf, duf307 family | SAMN04488101_101828 | Not Available | + | 961100 - 961468 | 13513.4 |
| outer membrane receptor proteins, mostly fe transport | SAMN04488101_101829 | Not Available | - | 961720 - 964155 | 89708.6 |
| hypothetical protein | SAMN04488101_101830 | Not Available | - | 964274 - 964612 | 12636.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.