Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ribosome-associated protein | SAMN04488101_101811 | Not Available | - | 942305 - 942511 | 7607.52 |
| l-proline dehydrogenase | SAMN04488101_101812 | Not Available | + | 942607 - 943791 | 44936.2 |
| putative hydrolase of the had superfamily | SAMN04488101_101813 | Not Available | - | 943900 - 944535 | 24596.1 |
| hypothetical protein | SAMN04488101_101814 | Not Available | + | 944678 - 945427 | 27919.1 |
| his kinase a (phospho-acceptor) domain-containing protein | SAMN04488101_101815 | Not Available | + | 945700 - 946887 | 45378.7 |
| two-component system, unclassified family, response regulator | SAMN04488101_101816 | Not Available | + | 946901 - 947341 | 16365.8 |
| pas domain s-box-containing protein | SAMN04488101_101817 | Not Available | + | 947343 - 948869 | 57961.7 |
| cytochrome c peroxidase | SAMN04488101_101818 | Not Available | - | 948873 - 950681 | 67663.9 |
| hypothetical protein | SAMN04488101_101819 | Not Available | - | 950754 - 952232 | 53883.6 |
| hypothetical protein | SAMN04488101_101820 | Not Available | - | 952329 - 953288 | 36513.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.