Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_101801 | Not Available | - | 931221 - 931586 | 14236.0 |
| Tmrna,resume consensus sequence (at 89): tataattggcgaaaataa | Not Available | Not Available | + | 931723 - 932087 | Not Available |
| aspartate aminotransferase | SAMN04488101_101803 | Not Available | - | 932153 - 933325 | 43504.1 |
| protein of unknown function | SAMN04488101_101804 | Not Available | - | 933452 - 933844 | 14023.2 |
| pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (e1) component | SAMN04488101_101805 | Not Available | + | 933871 - 936399 | 93897.0 |
| chorismate synthase | SAMN04488101_101806 | Not Available | - | 936476 - 937564 | 38836.2 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | SAMN04488101_101807 | Not Available | - | 937609 - 938868 | 46043.3 |
| 3-deoxy-d-arabinoheptulosonate-7-phosphate synthase | SAMN04488101_101808 | Not Available | - | 938871 - 940010 | 41954.8 |
| prephenate dehydratase | SAMN04488101_101809 | Not Available | - | 940065 - 940985 | 35061.2 |
| 3-dehydroquinate synthase | SAMN04488101_101810 | Not Available | - | 941238 - 942305 | 39691.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.