Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| carboxyl-terminal processing protease | SAMN04488101_101791 | Not Available | + | 916841 - 918901 | 76862.1 |
| hypothetical protein | SAMN04488101_101792 | Not Available | + | 918949 - 919818 | 32214.1 |
| peroxiredoxin | SAMN04488101_101793 | Not Available | + | 919825 - 920979 | 43828.6 |
| peroxiredoxin | SAMN04488101_101794 | Not Available | + | 921037 - 922194 | 43232.0 |
| hypothetical protein | SAMN04488101_101795 | Not Available | + | 922302 - 923189 | 33045.5 |
| predicted metalloprotease, contains c-terminal pdz domain | SAMN04488101_101796 | Not Available | + | 923264 - 925135 | 70974.3 |
| predicted zn-dependent peptidase | SAMN04488101_101797 | Not Available | + | 925153 - 928113 | 112165.0 |
| subtilase family protein | SAMN04488101_101798 | Not Available | + | 928178 - 929356 | 43539.8 |
| recombinase | SAMN04488101_101799 | Not Available | + | 929347 - 930306 | 37005.1 |
| transposase | SAMN04488101_101800 | Not Available | - | 930257 - 931054 | 30381.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.