Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| restriction endonuclease | SAMN04488101_101781 | Not Available | + | 899900 - 900343 | 16203.5 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_101782 | Not Available | + | 900572 - 901150 | 22367.7 |
| fecr family protein | SAMN04488101_101783 | Not Available | + | 901286 - 902437 | 43133.5 |
| outer membrane receptor proteins, mostly fe transport | SAMN04488101_101784 | Not Available | + | 902629 - 905373 | 102041.0 |
| peroxiredoxin | SAMN04488101_101785 | Not Available | + | 905445 - 906581 | 43050.2 |
| rna polymerase sigma factor, sigma-70 family | SAMN04488101_101786 | Not Available | + | 907505 - 908095 | 23281.3 |
| fecr family protein | SAMN04488101_101787 | Not Available | + | 908690 - 909928 | 45769.8 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_101788 | Not Available | + | 910273 - 913728 | 126226.0 |
| starch-binding associating with outer membrane | SAMN04488101_101789 | Not Available | + | 913757 - 915442 | 62937.8 |
| peroxiredoxin | SAMN04488101_101790 | Not Available | + | 915484 - 916770 | 47687.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.