Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| lipase (class 3) | SAMN04488101_10165 | Not Available | - | 85736 - 86845 | 41937.3 |
| hypothetical protein | SAMN04488101_10166 | Not Available | - | 86869 - 87702 | 32778.1 |
| 1-aminocyclopropane-1-carboxylate deaminase | SAMN04488101_10167 | Not Available | - | 87699 - 88586 | 32798.7 |
| 23s rrna pseudouridine1911/1915/1917 synthase | SAMN04488101_10168 | Not Available | + | 88942 - 89970 | 39143.8 |
| branched-chain amino acid aminotransferase | SAMN04488101_10169 | Not Available | + | 89989 - 90828 | 31613.4 |
| methionyl-trna formyltransferase | SAMN04488101_10170 | Not Available | - | 90898 - 91806 | 33228.4 |
| dna topoisomerase-1 | SAMN04488101_10171 | Not Available | + | 91866 - 92012 | 5496.56 |
| hypothetical protein | SAMN04488101_10172 | Not Available | - | 92052 - 92270 | 8315.78 |
| uncharacterized conserved protein ybbc, duf1343 family | SAMN04488101_10173 | Not Available | - | 92297 - 93571 | 47232.5 |
| lipoprotein-releasing system permease protein | SAMN04488101_10174 | Not Available | + | 93745 - 94872 | 42595.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.