Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized membrane protein | SAMN04488101_101761 | Not Available | + | 881188 - 883350 | 80449.1 |
| tigr02453 family protein | SAMN04488101_101762 | Not Available | + | 883379 - 884077 | 26770.6 |
| uncharacterized conserved protein ydei, yjbr/cyay-like superfamily, duf1801 family | SAMN04488101_101763 | Not Available | - | 884102 - 884680 | 22255.0 |
| ost-hth/lotus domain-containing protein | SAMN04488101_101764 | Not Available | - | 884717 - 885562 | 31537.1 |
| putative signal transducing protein | SAMN04488101_101765 | Not Available | + | 885737 - 885997 | 9626.1 |
| prephenate dehydrogenase | SAMN04488101_101766 | Not Available | - | 886031 - 886879 | 30942.2 |
| aspartate/methionine/tyrosine aminotransferase | SAMN04488101_101767 | Not Available | - | 887054 - 888199 | 42831.6 |
| ribosomal-protein-serine acetyltransferase | SAMN04488101_101768 | Not Available | + | 888410 - 888958 | 20626.0 |
| hypothetical protein | SAMN04488101_101769 | Not Available | + | 888937 - 889383 | 17033.4 |
| ribosomal-protein-alanine n-acetyltransferase | SAMN04488101_101770 | Not Available | - | 889390 - 889941 | 21263.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.