Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_101751 | Not Available | - | 871674 - 871934 | 10291.8 |
| hypothetical protein | SAMN04488101_101752 | Not Available | + | 872223 - 873095 | 32748.0 |
| protein of unknown function | SAMN04488101_101753 | Not Available | + | 873092 - 873874 | 29375.4 |
| hypothetical protein | SAMN04488101_101754 | Not Available | + | 873941 - 874381 | 16891.3 |
| predicted ntp pyrophosphohydrolase, nudix family | SAMN04488101_101755 | Not Available | + | 874384 - 874845 | 17134.6 |
| protein of unknown function | SAMN04488101_101756 | Not Available | + | 874900 - 875700 | 29893.0 |
| dna polymerase-3 subunit epsilon | SAMN04488101_101757 | Not Available | + | 875811 - 876290 | 18529.1 |
| planctomycete cytochrome c | SAMN04488101_101758 | Not Available | + | 876372 - 878690 | 87671.2 |
| protein of unknown function | SAMN04488101_101759 | Not Available | + | 878694 - 880145 | 53924.1 |
| hypothetical protein | SAMN04488101_101760 | Not Available | + | 880153 - 881178 | 38487.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.