Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin-like | SAMN04488101_101741 | Not Available | - | 861182 - 862414 | 47460.8 |
| susd family protein | SAMN04488101_101742 | Not Available | - | 862407 - 863804 | 51102.1 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_101743 | Not Available | - | 863806 - 867174 | 124194.0 |
| fecr family protein | SAMN04488101_101744 | Not Available | - | 867326 - 868465 | 42719.6 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_101745 | Not Available | - | 868523 - 869113 | 23364.2 |
| dihydrofolate reductase | SAMN04488101_101746 | Not Available | - | 869235 - 869780 | 20075.7 |
| protein of unknown function | SAMN04488101_101747 | Not Available | - | 869830 - 870102 | 9886.83 |
| hypothetical protein | SAMN04488101_101748 | Not Available | + | 870383 - 870622 | 9437.49 |
| protein of unknown function | SAMN04488101_101749 | Not Available | + | 870769 - 871065 | 11677.0 |
| protein of unknown function | SAMN04488101_101750 | Not Available | - | 871183 - 871584 | 15117.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.