Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin-like | SAMN04488101_101721 | Not Available | - | 843161 - 843466 | 11411.0 |
| hypothetical protein | SAMN04488101_101722 | Not Available | + | 843514 - 843888 | 14116.6 |
| cubico group peptidase, beta-lactamase class c family | SAMN04488101_101723 | Not Available | - | 843995 - 845323 | 48796.0 |
| alpha-l-fucosidase | SAMN04488101_101724 | Not Available | + | 845588 - 847387 | 67451.4 |
| melibiase | SAMN04488101_101725 | Not Available | + | 847587 - 849671 | 80162.6 |
| conserved hypothetical protein (putative transposase or invertase) | SAMN04488101_101726 | Not Available | + | 849950 - 850864 | 35197.7 |
| thiol-disulfide isomerase or thioredoxin | SAMN04488101_101727 | Not Available | + | 851137 - 852279 | 43766.6 |
| hypothetical protein | SAMN04488101_101728 | Not Available | + | 852292 - 853176 | 34056.1 |
| thiol-disulfide isomerase or thioredoxin | SAMN04488101_101729 | Not Available | + | 853291 - 854481 | 45259.8 |
| hypothetical protein | SAMN04488101_101730 | Not Available | + | 854862 - 855083 | 8331.39 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.