Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase sugar-binding region containing dxd motif-containing protein | SAMN04488101_101691 | Not Available | + | 813378 - 814745 | 53496.9 |
| methyltransferase fkbm domain-containing protein | SAMN04488101_101692 | Not Available | + | 814788 - 815627 | 32815.4 |
| peptidase c39 family protein | SAMN04488101_101693 | Not Available | + | 815639 - 817225 | 60245.4 |
| hypothetical protein | SAMN04488101_101694 | Not Available | + | 817370 - 817606 | 8193.67 |
| peroxiredoxin | SAMN04488101_101695 | Not Available | + | 817693 - 818784 | 41670.3 |
| hypothetical protein | SAMN04488101_101696 | Not Available | + | 818996 - 819274 | 9639.15 |
| thiol-disulfide isomerase or thioredoxin | SAMN04488101_101697 | Not Available | + | 819416 - 820747 | 51260.0 |
| glycosyl transferase, family 25 | SAMN04488101_101698 | Not Available | + | 821229 - 821879 | 25035.9 |
| glycosyl transferase, family 25 | SAMN04488101_101699 | Not Available | + | 821885 - 822559 | 25838.1 |
| bacteriocin-processing peptidase. cysteine peptidase. merops family c39 | SAMN04488101_101700 | Not Available | + | 822608 - 824803 | 83233.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.