Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| susd family protein | SAMN04488101_101681 | Not Available | - | 803346 - 804758 | 52488.5 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_101682 | Not Available | - | 804777 - 808040 | 120129.0 |
| fecr family protein | SAMN04488101_101683 | Not Available | - | 808276 - 809463 | 44014.4 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_101684 | Not Available | - | 809554 - 810144 | 22837.6 |
| protein-tyrosine phosphatase | SAMN04488101_101685 | Not Available | + | 810557 - 810886 | 12714.3 |
| protein of unknown function | SAMN04488101_101686 | Not Available | + | 810929 - 811306 | 14194.1 |
| hypothetical protein | SAMN04488101_101687 | Not Available | - | 811303 - 812037 | 26723.2 |
| transcriptional regulator, arsr family | SAMN04488101_101688 | Not Available | - | 812067 - 812390 | 12362.1 |
| uncharacterized conserved protein yndb, ahsa1/start domain | SAMN04488101_101689 | Not Available | - | 812371 - 812823 | 17454.8 |
| hypothetical protein | SAMN04488101_101690 | Not Available | + | 812914 - 813066 | 6043.36 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.