Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| neutral/alkaline non-lysosomal ceramidase, n-terminal | SAMN04488101_10155 | Not Available | + | 72005 - 73366 | 49818.7 |
| solute:na+ symporter, sss family | SAMN04488101_10156 | Not Available | + | 73390 - 74961 | 57755.4 |
| mn2+ and fe2+ transporters of the nramp family | SAMN04488101_10157 | Not Available | + | 75184 - 76389 | 42960.9 |
| nucleoside-diphosphate-sugar epimerase | SAMN04488101_10158 | Not Available | + | 76421 - 77437 | 36844.1 |
| dihydrodipicolinate synthase/n-acetylneuraminate lyase | SAMN04488101_10159 | Not Available | + | 77441 - 78511 | 39364.1 |
| glucose/arabinose dehydrogenase, beta-propeller fold | SAMN04488101_10160 | Not Available | + | 78533 - 80023 | 54471.2 |
| spfh domain, band 7 family protein | SAMN04488101_10161 | Not Available | + | 80074 - 80997 | 34541.9 |
| transketolase | SAMN04488101_10162 | Not Available | + | 80987 - 83008 | 74564.2 |
| fructose-bisphosphate aldolase, class i | SAMN04488101_10163 | Not Available | + | 83023 - 84051 | 38099.2 |
| pas domain s-box-containing protein | SAMN04488101_10164 | Not Available | - | 84069 - 85616 | 58684.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.