Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_101671 | Not Available | + | 794838 - 795476 | 24119.0 |
| smi1-knr4 cell-wall | SAMN04488101_101672 | Not Available | + | 795826 - 796269 | 16920.0 |
| hypothetical protein | SAMN04488101_101673 | Not Available | + | 796436 - 796732 | 10817.2 |
| protein of unknown function | SAMN04488101_101674 | Not Available | + | 796861 - 797235 | 14009.8 |
| uncharacterized membrane protein yhah, duf805 family | SAMN04488101_101675 | Not Available | - | 797692 - 798087 | 15149.3 |
| hypothetical protein | SAMN04488101_101676 | Not Available | + | 798982 - 799434 | 17813.2 |
| hypothetical protein | SAMN04488101_101677 | Not Available | + | 799462 - 799626 | 6223.58 |
| thiol-disulfide isomerase or thioredoxin | SAMN04488101_101678 | Not Available | - | 800325 - 801410 | 41574.4 |
| disulphide bond corrector protein dsbc | SAMN04488101_101679 | Not Available | - | 801407 - 801841 | 16226.9 |
| repeat domain-containing protein | SAMN04488101_101680 | Not Available | - | 801856 - 803316 | 54751.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.