Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN04488101_101651 | Not Available | - | 776719 - 778530 | 70442.9 |
| hypothetical protein | SAMN04488101_101652 | Not Available | - | 778957 - 780480 | 59665.1 |
| hypothetical protein | SAMN04488101_101653 | Not Available | - | 780585 - 781145 | 20919.6 |
| hypothetical protein | SAMN04488101_101654 | Not Available | - | 781200 - 781673 | 17844.5 |
| caax protease self-immunity | SAMN04488101_101655 | Not Available | + | 781968 - 782660 | 26825.1 |
| hypothetical protein | SAMN04488101_101656 | Not Available | + | 782761 - 783744 | 37829.1 |
| predicted phosphoesterase | SAMN04488101_101657 | Not Available | + | 783771 - 784517 | 28794.3 |
| hth domain-containing protein | SAMN04488101_101658 | Not Available | + | 784625 - 784792 | 6419.99 |
| hypothetical protein | SAMN04488101_101659 | Not Available | - | 785032 - 785640 | 22871.2 |
| hypothetical protein | SAMN04488101_101660 | Not Available | - | 785667 - 786245 | 20893.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.