Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | SAMN04488101_101631 | Not Available | + | 753065 - 753877 | 31164.0 |
| hypothetical protein | SAMN04488101_101632 | Not Available | + | 753927 - 754424 | 17922.1 |
| hypothetical protein | SAMN04488101_101633 | Not Available | + | 754414 - 755040 | 23734.9 |
| hypothetical protein | SAMN04488101_101634 | Not Available | + | 755288 - 756400 | 42976.4 |
| hypothetical protein | SAMN04488101_101635 | Not Available | + | 756853 - 757320 | 17461.1 |
| hypothetical protein | SAMN04488101_101636 | Not Available | + | 757325 - 757630 | 10883.9 |
| cytochrome oxidase cu insertion factor, sco1/senc/prrc family | SAMN04488101_101637 | Not Available | - | 757683 - 759155 | 56050.6 |
| susd family protein | SAMN04488101_101638 | Not Available | - | 759187 - 760563 | 52284.3 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_101639 | Not Available | - | 760574 - 763774 | 119190.0 |
| helix-turn-helix domain-containing protein | SAMN04488101_101640 | Not Available | + | 764360 - 764581 | 8584.46 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.