Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tpr repeat-containing protein | SAMN04488101_101621 | Not Available | + | 744379 - 745143 | 29708.8 |
| oxygen tolerance | SAMN04488101_101622 | Not Available | + | 745156 - 746970 | 66240.8 |
| sh3 domain-containing protein | SAMN04488101_101623 | Not Available | + | 746948 - 747739 | 29061.8 |
| helix-turn-helix | SAMN04488101_101624 | Not Available | - | 747716 - 748201 | 18999.2 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_101625 | Not Available | - | 748300 - 749556 | 48177.6 |
| uncharacterized conserved protein | SAMN04488101_101626 | Not Available | - | 749556 - 749894 | 12505.2 |
| fmn-dependent nadh-azoreductase | SAMN04488101_101627 | Not Available | - | 749917 - 750546 | 23462.4 |
| hypothetical protein | SAMN04488101_101628 | Not Available | + | 750619 - 751122 | 18662.3 |
| hypothetical protein | SAMN04488101_101629 | Not Available | + | 751141 - 751860 | 26477.9 |
| transcriptional regulator, arac family | SAMN04488101_101630 | Not Available | + | 751924 - 753003 | 40862.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.