Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| fecr family protein | SAMN04488101_101601 | Not Available | + | 717610 - 718803 | 44187.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_101602 | Not Available | + | 719216 - 722674 | 126563.0 |
| susd family protein | SAMN04488101_101603 | Not Available | + | 722679 - 724133 | 54009.4 |
| hypothetical protein | SAMN04488101_101604 | Not Available | + | 724219 - 724902 | 25460.7 |
| protein of unknown function | SAMN04488101_101605 | Not Available | + | 724916 - 725869 | 35077.5 |
| signal transduction histidine kinase | SAMN04488101_101606 | Not Available | - | 725953 - 727275 | 49749.0 |
| outer membrane protein tolc | SAMN04488101_101607 | Not Available | + | 727448 - 728794 | 50463.4 |
| rnd family efflux transporter, mfp subunit | SAMN04488101_101608 | Not Available | + | 728834 - 729934 | 39747.1 |
| multidrug efflux pump subunit acrb | SAMN04488101_101609 | Not Available | + | 729955 - 733335 | 125260.0 |
| hypothetical protein | SAMN04488101_101610 | Not Available | - | 733466 - 733975 | 19525.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.