Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_101591 | Not Available | - | 709572 - 709970 | 14734.8 |
| orotate phosphoribosyltransferase | SAMN04488101_101592 | Not Available | - | 709981 - 710634 | 24033.6 |
| rna polymerase primary sigma factor | SAMN04488101_101593 | Not Available | + | 711033 - 711893 | 32823.2 |
| nudix domain-containing protein | SAMN04488101_101594 | Not Available | + | 712038 - 712661 | 23381.5 |
| phosphopantetheine adenylyltransferase | SAMN04488101_101595 | Not Available | - | 712656 - 713117 | 17178.0 |
| 16s rrna (guanine(966)-n(2))-methyltransferase rsmd | SAMN04488101_101596 | Not Available | - | 713178 - 713717 | 20404.7 |
| protein of unknown function | SAMN04488101_101597 | Not Available | - | 713708 - 714538 | 31584.3 |
| exodeoxyribonuclease-5 | SAMN04488101_101598 | Not Available | + | 714591 - 716033 | 54225.0 |
| four helix bundle sensory module for signal transduction | SAMN04488101_101599 | Not Available | + | 716139 - 716825 | 25693.6 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_101600 | Not Available | + | 716917 - 717531 | 23840.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.