Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| polysaccharide deacetylase | SAMN04488101_101581 | Not Available | - | 694740 - 695633 | 33506.3 |
| dipeptidyl aminopeptidase/acylaminoacyl peptidase | SAMN04488101_101582 | Not Available | + | 695761 - 698274 | 95484.0 |
| outer membrane protein w | SAMN04488101_101583 | Not Available | - | 698368 - 698973 | 21401.5 |
| predicted glycosyl hydrolase, gh43/duf377 family | SAMN04488101_101584 | Not Available | + | 699259 - 700872 | 61323.2 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488101_101585 | Not Available | - | 700864 - 703140 | 86478.1 |
| opacity protein | SAMN04488101_101586 | Not Available | - | 703305 - 703964 | 24620.3 |
| outer membrane protein beta-barrel domain-containing protein | SAMN04488101_101587 | Not Available | - | 704001 - 704642 | 23626.0 |
| atp-dependent clp protease atp-binding subunit clpb | SAMN04488101_101588 | Not Available | - | 704781 - 707375 | 97355.5 |
| predicted arabinose efflux permease, mfs family | SAMN04488101_101589 | Not Available | + | 707618 - 708841 | 45085.5 |
| hypothetical protein | SAMN04488101_101590 | Not Available | + | 708894 - 709499 | 22460.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.