Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| substrate import-associated zinc metallohydrolase lipoprotein | SAMN04488101_101561 | Not Available | - | 674400 - 675728 | 49511.8 |
| susd family protein | SAMN04488101_101562 | Not Available | - | 675774 - 677249 | 55382.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_101563 | Not Available | - | 677262 - 680930 | 136404.0 |
| fecr family protein | SAMN04488101_101564 | Not Available | - | 681003 - 682151 | 42989.9 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_101565 | Not Available | - | 682255 - 682842 | 23071.8 |
| hypothetical protein | SAMN04488101_101566 | Not Available | + | 683077 - 683259 | 6774.16 |
| o-succinylbenzoate synthase | SAMN04488101_101567 | Not Available | - | 683267 - 684364 | 40517.2 |
| hypothetical protein | SAMN04488101_101568 | Not Available | + | 684459 - 686483 | 77197.7 |
| fkbp-type peptidyl prolyl cis-trans isomerase /apo-metallochaperone slyd | SAMN04488101_101569 | Not Available | + | 686491 - 686991 | 17849.9 |
| fur family transcriptional regulator, ferric uptake regulator | SAMN04488101_101570 | Not Available | - | 686995 - 687414 | 15975.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.