Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| arylsulfatase a | SAMN04488101_101551 | Not Available | + | 661268 - 662620 | 50372.2 |
| hypothetical protein | SAMN04488101_101552 | Not Available | + | 662659 - 664062 | 52742.8 |
| rhamnogalacturonyl hydrolase yesr | SAMN04488101_101553 | Not Available | + | 664065 - 665189 | 43803.3 |
| hypothetical protein | SAMN04488101_101554 | Not Available | + | 665205 - 666458 | 47811.6 |
| protein of unknown function | SAMN04488101_101555 | Not Available | + | 666673 - 668406 | 66805.6 |
| acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase | SAMN04488101_101556 | Not Available | + | 668489 - 669859 | 50365.0 |
| lysozyme | SAMN04488101_101557 | Not Available | + | 670013 - 670930 | 35808.0 |
| cardiolipin synthase | SAMN04488101_101558 | Not Available | - | 670943 - 672397 | 55028.9 |
| Trna-leu | Not Available | Not Available | + | 672624 - 672710 | Not Available |
| protein of unknown function | SAMN04488101_101560 | Not Available | - | 673075 - 674394 | 49190.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.