Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_101541 | Not Available | + | 645238 - 645915 | 25367.6 |
| protein of unknown function | SAMN04488101_101542 | Not Available | + | 645926 - 646948 | 38742.7 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_101543 | Not Available | + | 646948 - 650139 | 116844.0 |
| starch-binding associating with outer membrane | SAMN04488101_101544 | Not Available | + | 650152 - 651669 | 56925.5 |
| fasciclin domain-containing protein | SAMN04488101_101545 | Not Available | + | 651674 - 652393 | 26627.0 |
| protein of unknown function | SAMN04488101_101546 | Not Available | + | 652427 - 654133 | 61161.9 |
| type i phosphodiesterase / nucleotide pyrophosphatase | SAMN04488101_101547 | Not Available | + | 654257 - 656056 | 64268.2 |
| peptidase m60, enhancin and enhancin-like | SAMN04488101_101548 | Not Available | + | 656063 - 657994 | 71496.6 |
| concanavalin a-like lectin/glucanases superfamily protein | SAMN04488101_101549 | Not Available | + | 658008 - 659702 | 61506.4 |
| oxidoreductase family, nad-binding rossmann fold | SAMN04488101_101550 | Not Available | + | 659825 - 661255 | 53009.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.