Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| acetyl-coa carboxylase carboxyl transferase subunit beta | SAMN04488101_101511 | Not Available | - | 603606 - 604478 | 32266.2 |
| fructose-bisphosphate aldolase | SAMN04488101_101512 | Not Available | + | 604571 - 605650 | 39703.0 |
| low affinity fe/cu permease | SAMN04488101_101513 | Not Available | + | 605762 - 606250 | 18364.2 |
| predicted n-acyltransferase, gnat family | SAMN04488101_101514 | Not Available | + | 606216 - 606641 | 16332.6 |
| hydroxymethylglutaryl-coa lyase | SAMN04488101_101515 | Not Available | - | 606650 - 607525 | 32101.2 |
| nadh dehydrogenase | SAMN04488101_101516 | Not Available | - | 607522 - 608829 | 48336.7 |
| secd/secf fusion protein | SAMN04488101_101517 | Not Available | - | 608938 - 611919 | 107922.0 |
| dihydrofolate reductase | SAMN04488101_101518 | Not Available | - | 612033 - 612518 | 18111.7 |
| thymidylate synthase | SAMN04488101_101519 | Not Available | - | 612515 - 613309 | 30102.1 |
| endonuclease, uma2 family (restriction endonuclease fold) | SAMN04488101_101520 | Not Available | + | 613716 - 614225 | 19142.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.