Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| efflux transporter, outer membrane factor (omf) lipoprotein, nodt family | SAMN04488101_12634 | Not Available | + | 6025109 - 6026518 | 51516.3 |
| disulphide bond corrector protein dsbc | SAMN04488101_12635 | Not Available | + | 6027042 - 6027488 | 16484.1 |
| cytochrome c biogenesis protein transmembrane region | SAMN04488101_12636 | Not Available | + | 6027495 - 6028220 | 25407.2 |
| transposase | SAMN04488101_1271 | Not Available | + | 6028463 - 6029527 | 40362.6 |
| acetyltransferase (gnat) family protein | SAMN04488101_1272 | Not Available | + | 6029922 - 6030398 | 18052.8 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN04488101_1273 | Not Available | - | 6030477 - 6031379 | 33537.7 |
| activator of hsp90 atpase homolog 1-like protein | SAMN04488101_1274 | Not Available | - | 6031376 - 6031525 | 5775.82 |
| transcriptional regulator, arsr family | SAMN04488101_1275 | Not Available | - | 6031531 - 6031848 | 12182.9 |
| peptide-n-glycosidase f, n terminal | SAMN04488101_1276 | Not Available | + | 6032072 - 6033772 | 62858.5 |
| alpha-l-fucosidase | SAMN04488101_1277 | Not Available | + | 6033789 - 6035414 | 61631.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.