Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_12624 | Not Available | + | 6013990 - 6014199 | 7654.93 |
| helix-turn-helix domain-containing protein | SAMN04488101_12625 | Not Available | + | 6014372 - 6014701 | 12470.1 |
| 2-dehydro-3-deoxyphosphogluconate aldolase / (4s)-4-hydroxy-2-oxoglutarate aldolase | SAMN04488101_12626 | Not Available | - | 6014769 - 6015422 | 23945.1 |
| 2-dehydro-3-deoxygluconokinase | SAMN04488101_12627 | Not Available | - | 6015501 - 6016496 | 36732.4 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN04488101_12628 | Not Available | + | 6016669 - 6017490 | 28830.4 |
| mannonate dehydratase | SAMN04488101_12629 | Not Available | + | 6017516 - 6018691 | 43956.6 |
| transcriptional regulator, laci family | SAMN04488101_12630 | Not Available | - | 6018739 - 6019776 | 38165.9 |
| transcriptional regulator, tetr family | SAMN04488101_12631 | Not Available | + | 6019986 - 6020585 | 23525.7 |
| membrane fusion protein, multidrug efflux system | SAMN04488101_12632 | Not Available | + | 6020696 - 6021886 | 42516.2 |
| hydrophobic/amphiphilic exporter-1, hae1 family | SAMN04488101_12633 | Not Available | + | 6021898 - 6025089 | 115363.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.