Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hydroxypyruvate isomerase | SAMN04488101_12424 | Not Available | - | 5934815 - 5935753 | 34990.8 |
| thiamine biosynthesis lipoprotein | SAMN04488101_12425 | Not Available | - | 5935793 - 5936803 | 36792.9 |
| predicted dehydrogenase | SAMN04488101_12426 | Not Available | - | 5936810 - 5938129 | 49130.2 |
| formylglycine-generating enzyme, required for sulfatase activity, contains sumf1/fge domain | SAMN04488101_12427 | Not Available | - | 5938174 - 5939139 | 36451.7 |
| atp-dependent clp protease atp-binding subunit clpc | SAMN04488101_12428 | Not Available | - | 5939348 - 5941888 | 94579.3 |
| atp-binding cassette protein, chvd family | SAMN04488101_12429 | Not Available | + | 5942102 - 5943754 | 61754.5 |
| hypothetical protein | SAMN04488101_12430 | Not Available | - | 5943843 - 5944682 | 30575.7 |
| tat (twin-arginine translocation) pathway signal sequence | SAMN04488101_12431 | Not Available | - | 5944953 - 5945867 | 33636.2 |
| s-formylglutathione hydrolase frmb | SAMN04488101_12432 | Not Available | - | 5945983 - 5946771 | 29822.7 |
| hypothetical protein | SAMN04488101_12433 | Not Available | - | 5946913 - 5947131 | 8442.19 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.